SDS32167.1 protein (Microterricola viridarii)

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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protein homology

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Score

SDS32167.1

Major Facilitator Superfamily protein. (505 aa)

Predicted Functional Partners:

SDS46819.1

0.666

SDS14831.1

0.635

SDS32219.1

0.617

ung

0.570

SDS02429.1

0.544

SDS02505.1

0.519

SDS32339.1

0.513

SDT28059.1

0.482

SDS32674.1

0.478

SDS04604.1

0.436

Your Current Organism:

Microterricola viridarii

NCBI taxonomy Id: 412690
Other names: DSM 21772, JCM 15926, M. viridarii, Microterricola viridarii Matsumoto et al. 2008, NBRC 102123, NRRL B-24538, actinobacterium KV-677, strain KV-677

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDS02429.1	SDS02505.1	SAMN04489834_0717	SAMN04489834_0718	Iron complex transport system substrate-binding protein.	Ig-like domain (group 3).	0.986
SDS02429.1	SDS32167.1	SAMN04489834_0717	SAMN04489834_1266	Iron complex transport system substrate-binding protein.	Major Facilitator Superfamily protein.	0.544
SDS02505.1	SDS02429.1	SAMN04489834_0718	SAMN04489834_0717	Ig-like domain (group 3).	Iron complex transport system substrate-binding protein.	0.986
SDS02505.1	SDS32167.1	SAMN04489834_0718	SAMN04489834_1266	Ig-like domain (group 3).	Major Facilitator Superfamily protein.	0.519
SDS04604.1	SDS32167.1	SAMN04489834_0758	SAMN04489834_1266	Hypothetical protein.	Major Facilitator Superfamily protein.	0.436
SDS14831.1	SDS32167.1	SAMN04489834_0949	SAMN04489834_1266	Hypothetical protein.	Major Facilitator Superfamily protein.	0.635
SDS32167.1	SDS02429.1	SAMN04489834_1266	SAMN04489834_0717	Major Facilitator Superfamily protein.	Iron complex transport system substrate-binding protein.	0.544
SDS32167.1	SDS02505.1	SAMN04489834_1266	SAMN04489834_0718	Major Facilitator Superfamily protein.	Ig-like domain (group 3).	0.519
SDS32167.1	SDS04604.1	SAMN04489834_1266	SAMN04489834_0758	Major Facilitator Superfamily protein.	Hypothetical protein.	0.436
SDS32167.1	SDS14831.1	SAMN04489834_1266	SAMN04489834_0949	Major Facilitator Superfamily protein.	Hypothetical protein.	0.635
SDS32167.1	SDS32219.1	SAMN04489834_1266	SAMN04489834_1267	Major Facilitator Superfamily protein.	Hypothetical protein.	0.617
SDS32167.1	SDS32339.1	SAMN04489834_1266	SAMN04489834_1269	Major Facilitator Superfamily protein.	Phosphinothricin acetyltransferase.	0.513
SDS32167.1	SDS32674.1	SAMN04489834_1266	SAMN04489834_1275	Major Facilitator Superfamily protein.	Hypothetical protein.	0.478
SDS32167.1	SDS46819.1	SAMN04489834_1266	SAMN04489834_1536	Major Facilitator Superfamily protein.	Carboxypeptidase PM20D1.	0.666
SDS32167.1	SDT28059.1	SAMN04489834_1266	SAMN04489834_3296	Major Facilitator Superfamily protein.	Diguanylate cyclase (GGDEF) domain-containing protein.	0.482
SDS32167.1	ung	SAMN04489834_1266	SAMN04489834_1268	Major Facilitator Superfamily protein.	Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.	0.570
SDS32219.1	SDS32167.1	SAMN04489834_1267	SAMN04489834_1266	Hypothetical protein.	Major Facilitator Superfamily protein.	0.617
SDS32219.1	SDS32339.1	SAMN04489834_1267	SAMN04489834_1269	Hypothetical protein.	Phosphinothricin acetyltransferase.	0.757
SDS32219.1	ung	SAMN04489834_1267	SAMN04489834_1268	Hypothetical protein.	Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.	0.807
SDS32339.1	SDS32167.1	SAMN04489834_1269	SAMN04489834_1266	Phosphinothricin acetyltransferase.	Major Facilitator Superfamily protein.	0.513

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Network Stats

number of nodes:

11

number of edges:

37

average node degree:

6.73

avg. local clustering coefficient:

0.844

expected number of edges:

20

PPI enrichment p-value:

0.000539

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0016491

Oxidoreductase activity

7 of 325

0.85

0.59

0.0076

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:860

Carbon metabolism, and Valine, leucine and isoleucine biosynthesis

7 of 78

1.47

2.08

3.94e-07

CL:858

Mixed, incl. Carbon metabolism, and Fatty acid metabolic process

9 of 139

1.32

1.99

1.10e-08

CL:958

Glycolysis / Gluconeogenesis, and Pentose phosphate pathway

4 of 29

1.65

1.53

0.00037

CL:865

Citrate cycle (TCA cycle), and Dehydrogenase, E1 component

3 of 26

1.58

0.92

0.0120

CL:1042

Enoyl-CoA hydratase/isomerase, and Thiolase, N-terminal domain

2 of 5

2.12

0.9

0.0209

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00620

Pyruvate metabolism

3 of 34

1.46

0.97

0.0066

map01200

Carbon metabolism

4 of 86

1.18

0.83

0.0066

map00650

Butanoate metabolism

2 of 17

1.58

0.72

0.0351

map00020

Citrate cycle (TCA cycle)

2 of 21

1.49

0.67

0.0429

map01120

Microbial metabolism in diverse environments

5 of 224

0.86

0.58

0.0104

(more ...)

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF08240

Alcohol dehydrogenase GroES-like domain

2 of 3

2.34

0.75

0.0432

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