STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS36910.1Putative tricarboxylic transport membrane protein. (512 aa)    
Predicted Functional Partners:
SDS36795.1
Tripartite-type tricarboxylate transporter, receptor component TctC.
 
  
 0.991
SDS36848.1
Tripartite tricarboxylate transporter TctB family protein.
       0.780
SDS36965.1
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
       0.663
SDS21195.1
TRAP transporter, DctM subunit.
 
    0.616
SDS21260.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
     0.615
SDS00594.1
DNA-binding transcriptional regulator, IclR family.
 
    0.572
SDS36748.1
Transcriptional regulator, LacI family.
       0.460
SDS36671.1
4-hydroxy-2-oxoheptanedioate aldolase; Belongs to the HpcH/HpaI aldolase family.
 
     0.430
SDS11124.1
DNA-binding transcriptional regulator, IclR family.
 
    0.429
SDS37021.1
DNA-binding transcriptional regulator, AcrR family.
  
    0.403
Your Current Organism:
Microterricola viridarii
NCBI taxonomy Id: 412690
Other names: DSM 21772, JCM 15926, M. viridarii, Microterricola viridarii Matsumoto et al. 2008, NBRC 102123, NRRL B-24538, actinobacterium KV-677, strain KV-677
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.