STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS38618.1Uncharacterized membrane protein. (184 aa)    
Predicted Functional Partners:
SDS38663.1
Mg/Co/Ni transporter MgtE (contains CBS domain).
 
     0.965
SDS38550.1
ATP-binding protein involved in chromosome partitioning; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
       0.844
SDS38710.1
Hypothetical protein.
       0.707
SDS73655.1
Protein of unknown function.
 
     0.521
SDT23560.1
Protein of unknown function; May play a role in the intracellular transport of hydrophobic ligands.
 
     0.481
SDS50133.1
Protein of unknown function.
  
     0.456
SDS89986.1
Hypothetical protein; Manually curated.
  
     0.440
SDS79857.1
Protein of unknown function.
  
     0.426
Your Current Organism:
Microterricola viridarii
NCBI taxonomy Id: 412690
Other names: DSM 21772, JCM 15926, M. viridarii, Microterricola viridarii Matsumoto et al. 2008, NBRC 102123, NRRL B-24538, actinobacterium KV-677, strain KV-677
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.