STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS41253.1ABC-2 type transport system ATP-binding protein. (569 aa)    
Predicted Functional Partners:
SDS41305.1
ABC-2 type transport system permease protein.
 
  
 0.964
SDS41364.1
Protein of unknown function.
       0.769
SDR75063.1
NitT/TauT family transport system ATP-binding protein.
    
0.748
SDS13444.1
Branched-chain amino acid transport system ATP-binding protein.
     
0.507
SDR83748.1
ABC-2 type transport system permease protein.
  
 0.505
SDR95433.1
ABC-2 type transport system permease protein.
  
 
 0.492
SDT11790.1
ABC-type transport system involved in multi-copper enzyme maturation, permease component.
  
 
 0.492
SDS41197.1
Choline kinase.
       0.437
SDS22483.1
ATP-binding cassette, subfamily B.
 
 
0.434
SDS22417.1
ATP-binding cassette, subfamily B; Manually curated.
 
 
0.423
Your Current Organism:
Microterricola viridarii
NCBI taxonomy Id: 412690
Other names: DSM 21772, JCM 15926, M. viridarii, Microterricola viridarii Matsumoto et al. 2008, NBRC 102123, NRRL B-24538, actinobacterium KV-677, strain KV-677
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.