STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS41305.1ABC-2 type transport system permease protein. (524 aa)    
Predicted Functional Partners:
SDS41253.1
ABC-2 type transport system ATP-binding protein.
 
  
 0.964
SDS41364.1
Protein of unknown function.
       0.809
SDT20108.1
Hypothetical protein.
 
     0.609
SDS39625.1
Predicted kinase, aminoglycoside phosphotransferase (APT) family.
 
    0.539
SDS70837.1
Protein of unknown function.
 
     0.499
SDS11948.1
LysR substrate binding domain-containing protein.
 
     0.478
SDS42135.1
TadE-like protein.
 
     0.459
SDT27145.1
Protein of unknown function.
  
     0.451
SDS88682.1
Phosphatidate phosphatase APP1.
 
     0.440
SDS40853.1
CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase; Manually curated.
 
     0.439
Your Current Organism:
Microterricola viridarii
NCBI taxonomy Id: 412690
Other names: DSM 21772, JCM 15926, M. viridarii, Microterricola viridarii Matsumoto et al. 2008, NBRC 102123, NRRL B-24538, actinobacterium KV-677, strain KV-677
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.