STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS41937.1Pilus assembly protein CpaF. (413 aa)    
Predicted Functional Partners:
SDS41977.1
Tight adherence protein B.
  
 0.976
SDS42045.1
Tight adherence protein C.
 
  
 0.974
SDS42135.1
TadE-like protein.
 
  
 0.884
SDS42093.1
Hypothetical protein.
 
     0.855
SDS42183.1
Hypothetical protein.
 
     0.787
SDS42239.1
Putative Flp pilus-assembly TadE/G-like.
 
   
 0.782
SDT27178.1
Tight adherence protein B.
 
  
 0.691
SDS30452.1
Hypothetical protein.
 
    0.627
SDS30528.1
Hypothetical protein.
 
  
 0.589
SDS41873.1
Hypothetical protein.
       0.443
Your Current Organism:
Microterricola viridarii
NCBI taxonomy Id: 412690
Other names: DSM 21772, JCM 15926, M. viridarii, Microterricola viridarii Matsumoto et al. 2008, NBRC 102123, NRRL B-24538, actinobacterium KV-677, strain KV-677
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.