STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS43299.1Hemolysin-type calcium-binding repeat-containing protein. (1890 aa)    
Predicted Functional Partners:
SDS91277.1
Flagellar motor switch protein FliN/FliY.
  
   0.575
SDS80186.1
Hypothetical protein.
 
     0.566
SDS43012.1
Protocatechuate 3,4-dioxygenase, alpha subunit.
 
     0.471
SDS43248.1
Hypothetical protein.
       0.465
SDS43184.1
4-carboxymuconolactone decarboxylase.
 
    0.455
SDS43062.1
3-carboxy-cis,cis-muconate cycloisomerase.
 
     0.445
SDS42958.1
Protocatechuate 3,4-dioxygenase, beta subunit.
 
     0.440
SDS91793.1
Flagellar basal-body rod modification protein FlgD.
  
   0.433
SDR78862.1
Sortase A.
  
  
 0.427
SDS79180.1
Protein of unknown function.
  
  
 0.421
Your Current Organism:
Microterricola viridarii
NCBI taxonomy Id: 412690
Other names: DSM 21772, JCM 15926, M. viridarii, Microterricola viridarii Matsumoto et al. 2008, NBRC 102123, NRRL B-24538, actinobacterium KV-677, strain KV-677
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