STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS50133.1Protein of unknown function. (161 aa)    
Predicted Functional Partners:
SDT02001.1
SseB protein N-terminal domain-containing protein.
  
     0.741
SDS20233.1
Cytochrome oxidase assembly protein ShyY1.
  
     0.716
thiL
Thiamine-phosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.
       0.712
SDS39625.1
Predicted kinase, aminoglycoside phosphotransferase (APT) family.
  
     0.676
SDT23297.1
Hypothetical protein.
  
     0.634
SDS76306.1
Menaquinol-cytochrome c reductase iron-sulfur subunit precursor.
  
     0.631
SDR91392.1
Cytochrome c biogenesis protein.
  
     0.629
SDR81831.1
Putative copper resistance protein D.
  
     0.623
SDS42135.1
TadE-like protein.
  
     0.595
SDT06024.1
Hypothetical protein.
  
     0.583
Your Current Organism:
Microterricola viridarii
NCBI taxonomy Id: 412690
Other names: DSM 21772, JCM 15926, M. viridarii, Microterricola viridarii Matsumoto et al. 2008, NBRC 102123, NRRL B-24538, actinobacterium KV-677, strain KV-677
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.