STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS54124.1Amino acid ABC transporter ATP-binding protein, PAAT family. (273 aa)    
Predicted Functional Partners:
SDS54034.1
Amino acid ABC transporter membrane protein, PAAT family.
    0.974
SDT35258.1
Amino acid ABC transporter membrane protein, PAAT family.
    0.969
SDS95072.1
Putative ABC transport system permease protein.
 
 
 0.940
SDR70918.1
Amino acid ABC transporter membrane protein, PAAT family.
    0.936
SDS53978.1
Amino acid ABC transporter substrate-binding protein, PAAT family.
 
 
   0.903
SDS37068.1
ATP-binding cassette, subfamily B.
     
0.901
SDT32781.1
ATP-binding cassette, subfamily B.
     
0.901
SDS51090.1
Peptide/nickel transport system ATP-binding protein.
     
0.900
SDS88086.1
ATP-binding cassette, subfamily C, CydC.
 
   
0.889
SDS13328.1
Branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
    0.817
Your Current Organism:
Microterricola viridarii
NCBI taxonomy Id: 412690
Other names: DSM 21772, JCM 15926, M. viridarii, Microterricola viridarii Matsumoto et al. 2008, NBRC 102123, NRRL B-24538, actinobacterium KV-677, strain KV-677
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.