Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDS66655.1 | SDS66857.1 | SAMN04489834_1904 | SAMN04489834_1907 | Hypothetical protein. | Orotidine-5'-phosphate decarboxylase. | 0.959 |
SDS66655.1 | SDS67943.1 | SAMN04489834_1904 | SAMN04489834_1927 | Hypothetical protein. | Glutamate synthase (NADH) large subunit. | 0.562 |
SDS66655.1 | carA | SAMN04489834_1904 | SAMN04489834_1905 | Hypothetical protein. | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | 0.944 |
SDS66655.1 | carB | SAMN04489834_1904 | SAMN04489834_1906 | Hypothetical protein. | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | 0.994 |
SDS66655.1 | purF | SAMN04489834_1904 | SAMN04489834_0720 | Hypothetical protein. | Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine. | 0.447 |
SDS66655.1 | pyrB | SAMN04489834_1904 | SAMN04489834_1902 | Hypothetical protein. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.964 |
SDS66655.1 | pyrC | SAMN04489834_1904 | SAMN04489834_1903 | Hypothetical protein. | Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily. | 0.957 |
SDS66655.1 | pyrD | SAMN04489834_1904 | SAMN04489834_2366 | Hypothetical protein. | Dihydroorotate oxidase A; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.807 |
SDS66655.1 | pyrE | SAMN04489834_1904 | SAMN04489834_0622 | Hypothetical protein. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.756 |
SDS66655.1 | pyrR | SAMN04489834_1904 | SAMN04489834_1901 | Hypothetical protein. | Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant. | 0.952 |
SDS66857.1 | SDS66655.1 | SAMN04489834_1907 | SAMN04489834_1904 | Orotidine-5'-phosphate decarboxylase. | Hypothetical protein. | 0.959 |
SDS66857.1 | SDS67943.1 | SAMN04489834_1907 | SAMN04489834_1927 | Orotidine-5'-phosphate decarboxylase. | Glutamate synthase (NADH) large subunit. | 0.562 |
SDS66857.1 | carA | SAMN04489834_1907 | SAMN04489834_1905 | Orotidine-5'-phosphate decarboxylase. | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | 0.993 |
SDS66857.1 | carB | SAMN04489834_1907 | SAMN04489834_1906 | Orotidine-5'-phosphate decarboxylase. | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | 0.997 |
SDS66857.1 | pyrB | SAMN04489834_1907 | SAMN04489834_1902 | Orotidine-5'-phosphate decarboxylase. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.994 |
SDS66857.1 | pyrC | SAMN04489834_1907 | SAMN04489834_1903 | Orotidine-5'-phosphate decarboxylase. | Dihydroorotase; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily. | 0.973 |
SDS66857.1 | pyrD | SAMN04489834_1907 | SAMN04489834_2366 | Orotidine-5'-phosphate decarboxylase. | Dihydroorotate oxidase A; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.974 |
SDS66857.1 | pyrE | SAMN04489834_1907 | SAMN04489834_0622 | Orotidine-5'-phosphate decarboxylase. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.998 |
SDS66857.1 | pyrR | SAMN04489834_1907 | SAMN04489834_1901 | Orotidine-5'-phosphate decarboxylase. | Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant. | 0.997 |
SDS67943.1 | SDS66655.1 | SAMN04489834_1927 | SAMN04489834_1904 | Glutamate synthase (NADH) large subunit. | Hypothetical protein. | 0.562 |
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