STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS69949.13-phenylpropionate/trans-cinnamate dioxygenase ferredoxin subunit. (108 aa)    
Predicted Functional Partners:
SDS69890.1
Iron-regulated ABC transporter permease protein SufD.
 
     0.892
SDS69839.1
Iron-regulated ABC transporter membrane component SufB.
 
     0.840
SDS70069.1
Metal-sulfur cluster biosynthetic enzyme.
 
     0.804
SufC
Iron-regulated ABC transporter ATPase subunit SufC.
       0.766
SDT20140.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
  
 
 0.675
SDS69792.1
Cytochrome c oxidase assembly protein subunit 15.
  
    0.602
SDS12689.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
  
 
 0.593
SDS67943.1
Glutamate synthase (NADH) large subunit.
  
  
 0.512
SDT17254.1
Nitrogen fixation protein NifU.
 
     0.489
Your Current Organism:
Microterricola viridarii
NCBI taxonomy Id: 412690
Other names: DSM 21772, JCM 15926, M. viridarii, Microterricola viridarii Matsumoto et al. 2008, NBRC 102123, NRRL B-24538, actinobacterium KV-677, strain KV-677
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.