STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS70283.1Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily. (526 aa)    
Predicted Functional Partners:
SDS70330.1
Peptide/nickel transport system permease protein.
     0.963
SDS13032.1
Peptide/nickel transport system permease protein.
     0.862
SDT10776.1
Peptide/nickel transport system permease protein.
      0.844
SDT18463.1
Peptide/nickel transport system permease protein.
     0.835
SDS70443.1
Peptide/nickel transport system substrate-binding protein.
 
    0.821
SDS70387.1
Peptide/nickel transport system permease protein.
     0.810
SDS51138.1
Peptide/nickel transport system permease protein.
     0.800
SDS70197.1
L-amino acid N-acyltransferase YncA.
  
    0.780
valS
valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner.
       0.778
SDS70152.1
Hypothetical protein.
       0.773
Your Current Organism:
Microterricola viridarii
NCBI taxonomy Id: 412690
Other names: DSM 21772, JCM 15926, M. viridarii, Microterricola viridarii Matsumoto et al. 2008, NBRC 102123, NRRL B-24538, actinobacterium KV-677, strain KV-677
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.