STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS73023.1Glycosyltransferase involved in cell wall bisynthesis. (357 aa)    
Predicted Functional Partners:
SDS72978.1
Pimeloyl-ACP methyl ester carboxylesterase.
 
    0.942
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
 0.672
SDS72917.1
Maltose alpha-D-glucosyltransferase/ alpha-amylase.
  
 
 0.650
SDS57232.1
Glycogen operon protein; Belongs to the glycosyl hydrolase 13 family.
  
 0.623
SDS84907.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.622
SDS72875.1
DNA polymerase-3 subunit epsilon.
   
   0.550
SDS60664.1
Hypothetical protein.
  
    0.466
SDR90048.1
Transcriptional regulatory protein, C terminal.
 
     0.457
SDT23560.1
Protein of unknown function; May play a role in the intracellular transport of hydrophobic ligands.
 
     0.451
SDS27768.1
dTDP-4-dehydrorhamnose 3,5-epimerase.
  
  
 0.414
Your Current Organism:
Microterricola viridarii
NCBI taxonomy Id: 412690
Other names: DSM 21772, JCM 15926, M. viridarii, Microterricola viridarii Matsumoto et al. 2008, NBRC 102123, NRRL B-24538, actinobacterium KV-677, strain KV-677
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.