STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS84062.1Hypothetical protein. (89 aa)    
Predicted Functional Partners:
SDS84126.1
Hypothetical protein.
 
     0.949
SDS84173.1
Hypothetical protein.
 
     0.946
SDS84409.1
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase.
 
     0.807
SDS84316.1
Hypothetical protein; Manually curated.
 
     0.805
SDS83896.1
Peptidase family M23.
 
     0.804
SDS83535.1
Bifunctional DNA primase/polymerase, N-terminal.
 
     0.785
SDS83616.1
Homeodomain-like domain-containing protein.
 
     0.782
SDS84507.1
Hypothetical protein; Manually curated.
 
     0.782
SDS83488.1
Hypothetical protein.
 
     0.781
SDS83790.1
Chromosome partitioning protein, ParB family.
 
     0.780
Your Current Organism:
Microterricola viridarii
NCBI taxonomy Id: 412690
Other names: DSM 21772, JCM 15926, M. viridarii, Microterricola viridarii Matsumoto et al. 2008, NBRC 102123, NRRL B-24538, actinobacterium KV-677, strain KV-677
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.