STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS84907.1Glycosyltransferase involved in cell wall bisynthesis. (420 aa)    
Predicted Functional Partners:
SDS84964.1
Hypothetical protein.
     0.985
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
 0.672
SDS57232.1
Glycogen operon protein; Belongs to the glycosyl hydrolase 13 family.
  
 0.623
SDS73023.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.622
SDS75085.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
   0.619
SDS72978.1
Pimeloyl-ACP methyl ester carboxylesterase.
 
    0.549
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
       0.457
SDT34115.1
UDPglucose 6-dehydrogenase.
 
  
 0.446
SDS84790.1
Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
  
    0.426
SDS90344.1
MinD-like ATPase involved in chromosome partitioning or flagellar assembly.
 
    0.419
Your Current Organism:
Microterricola viridarii
NCBI taxonomy Id: 412690
Other names: DSM 21772, JCM 15926, M. viridarii, Microterricola viridarii Matsumoto et al. 2008, NBRC 102123, NRRL B-24538, actinobacterium KV-677, strain KV-677
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.