STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS88449.1Osmoprotectant transport system substrate-binding protein. (319 aa)    
Predicted Functional Partners:
SDS88499.1
Osmoprotectant transport system permease protein.
  
 0.998
SDS88584.1
Osmoprotectant transport system ATP-binding protein.
 
 0.998
SDS88541.1
Osmoprotectant transport system permease protein.
 
  
 0.990
SDS38710.1
Hypothetical protein.
  
    0.846
SDR81364.1
Glycine betaine/proline transport system permease protein.
 
  
 0.748
SDS88638.1
DNA-binding transcriptional regulator, AcrR family.
       0.719
SDR76693.1
Hypothetical protein.
  
    0.635
SDS88682.1
Phosphatidate phosphatase APP1.
 
     0.604
SDR81407.1
Glycine betaine/proline transport system substrate-binding protein.
  
 
 0.506
SDT23843.1
Phosphate ABC transporter substrate-binding protein, PhoT family; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.
  
 
 0.458
Your Current Organism:
Microterricola viridarii
NCBI taxonomy Id: 412690
Other names: DSM 21772, JCM 15926, M. viridarii, Microterricola viridarii Matsumoto et al. 2008, NBRC 102123, NRRL B-24538, actinobacterium KV-677, strain KV-677
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.