STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS90252.1Long-chain acyl-CoA synthetase. (609 aa)    
Predicted Functional Partners:
SDS06709.1
Acyl-coenzyme A oxidase.
 
 0.743
SDS26771.1
glutaryl-CoA dehydrogenase.
 
 0.729
SDS28989.1
glutaryl-CoA dehydrogenase.
 
 0.726
rplE
LSU ribosomal protein L5P; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.
   
 
 0.714
SDS90212.1
Glucokinase.
       0.694
SDT18774.1
Acyl-CoA dehydrogenase.
  
 0.691
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
   
  0.665
SDT16601.1
FRG domain-containing protein.
   
  0.665
SDS60609.1
acyl-CoA thioesterase-2.
  
 
 0.637
SDS90169.1
1-acyl-sn-glycerol-3-phosphate acyltransferase.
  
  
 0.637
Your Current Organism:
Microterricola viridarii
NCBI taxonomy Id: 412690
Other names: DSM 21772, JCM 15926, M. viridarii, Microterricola viridarii Matsumoto et al. 2008, NBRC 102123, NRRL B-24538, actinobacterium KV-677, strain KV-677
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.