STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT04182.1DNA-binding transcriptional regulator, Lrp family. (156 aa)    
Predicted Functional Partners:
SDR74135.1
DNA-binding transcriptional regulator, Lrp family.
  
     0.770
SDR97515.1
DNA-binding transcriptional regulator, Lrp family; Manually curated.
  
     0.766
SDS37394.1
Transcriptional regulator, AsnC family.
  
     0.634
SDT04045.1
Pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase).
  
    0.485
SDT04084.1
Pyruvate dehydrogenase E1 component beta subunit.
       0.474
SDT04136.1
Pyruvate dehydrogenase E1 component alpha subunit.
       0.474
SDT03886.1
Acyl dehydratase.
 
    0.468
SDS67943.1
Glutamate synthase (NADH) large subunit.
     
 0.447
Your Current Organism:
Microterricola viridarii
NCBI taxonomy Id: 412690
Other names: DSM 21772, JCM 15926, M. viridarii, Microterricola viridarii Matsumoto et al. 2008, NBRC 102123, NRRL B-24538, actinobacterium KV-677, strain KV-677
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.