STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT07794.1Hypothetical protein. (90 aa)    
Predicted Functional Partners:
SDT07751.1
Inner membrane transporter RhtA.
       0.508
SDT07826.1
Regulatory helix-turn-helix protein, lysR family; Belongs to the LysR transcriptional regulatory family.
       0.490
SDT21066.1
HNH endonuclease.
 
     0.434
SDT28503.1
HNH endonuclease.
 
     0.422
SDS79282.1
HNH endonuclease.
 
     0.418
SDS73830.1
HNH endonuclease.
 
     0.417
SDS01407.1
Very-short-patch-repair endonuclease.
  
     0.414
SDS64253.1
HNH endonuclease.
 
     0.413
SDS39252.1
Protein of unknown function.
  
     0.403
Your Current Organism:
Microterricola viridarii
NCBI taxonomy Id: 412690
Other names: DSM 21772, JCM 15926, M. viridarii, Microterricola viridarii Matsumoto et al. 2008, NBRC 102123, NRRL B-24538, actinobacterium KV-677, strain KV-677
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.