STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT10275.1Protein of unknown function. (137 aa)    
Predicted Functional Partners:
SDT10225.1
Hypothetical protein.
       0.692
greA
Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
       0.683
SDT02271.1
LysM domain-containing protein.
  
     0.565
SDS40853.1
CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase; Manually curated.
  
     0.534
SDS08891.1
Protein of unknown function.
  
     0.491
SDT23782.1
8-oxo-dGTP diphosphatase.
  
     0.473
SDT09903.1
Protein of unknown function.
  
     0.471
SDS22169.1
Hypothetical protein.
  
     0.470
SDT02001.1
SseB protein N-terminal domain-containing protein.
  
     0.464
SDS41197.1
Choline kinase.
  
     0.442
Your Current Organism:
Microterricola viridarii
NCBI taxonomy Id: 412690
Other names: DSM 21772, JCM 15926, M. viridarii, Microterricola viridarii Matsumoto et al. 2008, NBRC 102123, NRRL B-24538, actinobacterium KV-677, strain KV-677
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.