STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT10494.1Putative spermidine/putrescine transport system permease protein. (272 aa)    
Predicted Functional Partners:
SDT10534.1
Putative spermidine/putrescine transport system permease protein.
 
    0.976
SDT10587.1
Putative spermidine/putrescine transport system substrate-binding protein.
 
    0.938
SDT10438.1
Putative spermidine/putrescine transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  
 0.924
SDT10347.1
L-threonine ammonia-lyase.
  
    0.656
SDT10396.1
Predicted PurR-regulated permease PerM.
       0.638
SDS13984.1
Putative spermidine/putrescine transport system permease protein.
  
  
 0.436
SDS57975.1
Putative spermidine/putrescine transport system permease protein.
  
  
 0.436
SDT34780.1
Spermidine/putrescine transport system permease protein.
  
  
 0.436
SDS14056.1
Putative spermidine/putrescine transport system substrate-binding protein.
  
  
 0.434
SDS57933.1
Putative spermidine/putrescine transport system substrate-binding protein.
  
  
 0.434
Your Current Organism:
Microterricola viridarii
NCBI taxonomy Id: 412690
Other names: DSM 21772, JCM 15926, M. viridarii, Microterricola viridarii Matsumoto et al. 2008, NBRC 102123, NRRL B-24538, actinobacterium KV-677, strain KV-677
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.