STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT10587.1Putative spermidine/putrescine transport system substrate-binding protein. (374 aa)    
Predicted Functional Partners:
SDT10534.1
Putative spermidine/putrescine transport system permease protein.
 
  
 0.942
SDT10494.1
Putative spermidine/putrescine transport system permease protein.
 
    0.938
SDT10438.1
Putative spermidine/putrescine transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  
 0.873
SDT06426.1
High-affinity iron transporter.
 
  
 0.562
SDT10396.1
Predicted PurR-regulated permease PerM.
  
    0.528
SDT10347.1
L-threonine ammonia-lyase.
       0.520
SDS91368.1
Chemotaxis protein MotB.
   
   0.509
SDT06471.1
Iron uptake system component EfeO.
  
    0.508
SDT10648.1
Hypothetical protein.
       0.476
SDR73702.1
Na+/melibiose symporter.
  
  
 0.427
Your Current Organism:
Microterricola viridarii
NCBI taxonomy Id: 412690
Other names: DSM 21772, JCM 15926, M. viridarii, Microterricola viridarii Matsumoto et al. 2008, NBRC 102123, NRRL B-24538, actinobacterium KV-677, strain KV-677
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.