STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT12543.1Transcriptional regulator, GntR family. (249 aa)    
Predicted Functional Partners:
SDT12584.1
Fructose-bisphosphate aldolase class Ia, DhnA family.
 
     0.785
SDR99194.1
5-deoxyglucuronate isomerase; Manually curated.
 
    0.739
SDT12625.1
5-dehydro-2-deoxygluconokinase.
 
     0.726
SDR99253.1
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase; Belongs to the TPP enzyme family.
 
  
 0.681
SDT21635.1
Predicted transcriptional regulator, ArsR family.
  
  
 0.641
SDT12510.1
L-iditol 2-dehydrogenase.
       0.517
SDS23511.1
N-acetylglucosamine 6-phosphate deacetylase.
  
  
 0.501
SDR99094.1
2-keto-myo-inositol dehydratase.
 
  
 0.475
iolG
Myo-inositol 2-dehydrogenase; Involved in the oxidation of myo-inositol (MI) to 2-keto-myo- inositol (2KMI or 2-inosose).
 
    0.461
SDR71520.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
  
 0.404
Your Current Organism:
Microterricola viridarii
NCBI taxonomy Id: 412690
Other names: DSM 21772, JCM 15926, M. viridarii, Microterricola viridarii Matsumoto et al. 2008, NBRC 102123, NRRL B-24538, actinobacterium KV-677, strain KV-677
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.