STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT17857.1PPOX class probable F420-dependent enzyme. (129 aa)    
Predicted Functional Partners:
SDS93850.1
Deazaflavin-dependent oxidoreductase, nitroreductase family.
 
  
 0.545
SDT17816.1
Uncharacterized protein.
       0.530
SDT17904.1
LysM domain-containing protein.
       0.514
SDS74261.1
PAC2 family protein; Manually curated.
 
    0.502
SDT24621.1
Deazaflavin-dependent oxidoreductase, nitroreductase family.
 
  
 0.475
SDR85147.1
DNA-binding transcriptional regulator, MarR family.
 
     0.460
SDT15316.1
Probable F420-dependent oxidoreductase, Rv1855c family.
 
     0.454
SDT15760.1
PPOX class probable F420-dependent enzyme, Rv3369 family.
 
   
 0.425
SDS92898.1
Deazaflavin-dependent oxidoreductase, nitroreductase family.
 
    0.407
Your Current Organism:
Microterricola viridarii
NCBI taxonomy Id: 412690
Other names: DSM 21772, JCM 15926, M. viridarii, Microterricola viridarii Matsumoto et al. 2008, NBRC 102123, NRRL B-24538, actinobacterium KV-677, strain KV-677
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.