STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT18003.1DnaJ domain-containing protein. (309 aa)    
Predicted Functional Partners:
SDS56891.1
Hypothetical protein.
  
     0.558
SDS91277.1
Flagellar motor switch protein FliN/FliY.
   
   0.512
SDT18032.1
Hypothetical protein.
       0.505
SDT17945.1
Listeria/Bacterioides repeat-containing protein.
       0.456
SDT03675.1
Probable phosphoglycerate mutase.
  
     0.441
SDS09023.1
Uncharacterized membrane protein YdbT, contains bPH2 (pleckstrin homology) domain.
 
     0.437
SDS73228.1
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family.
 
     0.425
SDS27128.1
Hypothetical protein.
  
     0.420
SDR77296.1
Beta-lactamase class A.
  
     0.400
Your Current Organism:
Microterricola viridarii
NCBI taxonomy Id: 412690
Other names: DSM 21772, JCM 15926, M. viridarii, Microterricola viridarii Matsumoto et al. 2008, NBRC 102123, NRRL B-24538, actinobacterium KV-677, strain KV-677
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.