STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT20571.1Glutamate carboxypeptidase. (390 aa)    
Predicted Functional Partners:
menC-2
O-succinylbenzoate synthase; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB).
     0.988
SDT20525.1
Predicted acetyltransferase, GNAT superfamily.
     0.988
SDT20603.1
Dipeptidyl aminopeptidase/acylaminoacyl peptidase.
     0.985
SDT20751.1
Peptide/nickel transport system substrate-binding protein.
     0.941
SDT20677.1
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component.
  
 0.913
SDT20706.1
Peptide/nickel transport system permease protein.
     0.877
SDT20800.1
Sugar diacid utilization regulator.
 
     0.858
SDT20641.1
Peptide/nickel transport system ATP-binding protein.
      0.805
SDS72875.1
DNA polymerase-3 subunit epsilon.
    
 0.701
argG
Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 2 subfamily.
 
 
 0.582
Your Current Organism:
Microterricola viridarii
NCBI taxonomy Id: 412690
Other names: DSM 21772, JCM 15926, M. viridarii, Microterricola viridarii Matsumoto et al. 2008, NBRC 102123, NRRL B-24538, actinobacterium KV-677, strain KV-677
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