STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT20677.1ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component. (604 aa)    
Predicted Functional Partners:
SDT20706.1
Peptide/nickel transport system permease protein.
 0.998
SDT20751.1
Peptide/nickel transport system substrate-binding protein.
 
 0.973
SDT20603.1
Dipeptidyl aminopeptidase/acylaminoacyl peptidase.
    0.945
SDT20641.1
Peptide/nickel transport system ATP-binding protein.
 
  
0.934
SDT20525.1
Predicted acetyltransferase, GNAT superfamily.
     0.925
SDT20571.1
Glutamate carboxypeptidase.
  
 0.913
menC-2
O-succinylbenzoate synthase; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB).
    0.898
SDT25729.1
Peptide/nickel transport system permease protein.
 
 0.854
SDS82086.1
Peptide/nickel transport system permease protein.
 
 0.850
SDT20800.1
Sugar diacid utilization regulator.
 
     0.838
Your Current Organism:
Microterricola viridarii
NCBI taxonomy Id: 412690
Other names: DSM 21772, JCM 15926, M. viridarii, Microterricola viridarii Matsumoto et al. 2008, NBRC 102123, NRRL B-24538, actinobacterium KV-677, strain KV-677
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.