STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT28144.1DNA-binding transcriptional regulator, GntR family. (218 aa)    
Predicted Functional Partners:
SDT08068.1
DNA-binding transcriptional regulator, GntR family.
  
     0.774
SDS04182.1
DNA-binding transcriptional regulator, GntR family.
  
     0.771
SDR84562.1
DNA-binding transcriptional regulator, GntR family.
  
     0.761
SDR72778.1
DNA-binding transcriptional regulator, FadR family.
 
  
 0.760
SDT34941.1
Transcriptional regulator, GntR family.
 
  
 0.742
SDT28861.1
DNA-binding transcriptional regulator, FadR family.
 
  
 0.719
SDS48008.1
Transcriptional regulator, GntR family.
 
  
 0.699
SDS60482.1
DNA-binding transcriptional regulator, FadR family.
 
  
 0.678
SDS21833.1
DNA-binding transcriptional regulator, FadR family.
 
  
 0.665
SDR73518.1
DNA-binding transcriptional regulator, FadR family.
 
  
 0.619
Your Current Organism:
Microterricola viridarii
NCBI taxonomy Id: 412690
Other names: DSM 21772, JCM 15926, M. viridarii, Microterricola viridarii Matsumoto et al. 2008, NBRC 102123, NRRL B-24538, actinobacterium KV-677, strain KV-677
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.