STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT31440.1Regulatory protein, tetR family. (211 aa)    
Predicted Functional Partners:
SDT31406.1
Protein-tyrosine phosphatase.
     0.955
phnC
Phosphonate transport system ATP-binding protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.
 
     0.901
SDT31381.1
Phosphonate transport system permease protein.
 
     0.891
SDT31327.1
Phosphonate transport system substrate-binding protein.
 
    0.831
SDT24186.1
DNA-binding transcriptional regulator, AcrR family.
  
     0.509
SDS96734.1
DNA-binding transcriptional regulator, AcrR family.
  
     0.479
SDR75411.1
CAAX protease self-immunity.
 
     0.466
SDT33286.1
DNA-binding transcriptional regulator, AcrR family.
  
     0.460
SDS97521.1
DNA-binding transcriptional regulator, AcrR family.
  
     0.427
SDT31162.1
DNA-binding transcriptional regulator, AcrR family.
 
    0.408
Your Current Organism:
Microterricola viridarii
NCBI taxonomy Id: 412690
Other names: DSM 21772, JCM 15926, M. viridarii, Microterricola viridarii Matsumoto et al. 2008, NBRC 102123, NRRL B-24538, actinobacterium KV-677, strain KV-677
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.