STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COSY_0475Hypothetical protein. (221 aa)    
Predicted Functional Partners:
tolB
Biopolymer transport protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
  
 0.944
pal
Peptidoglycan-associated lipoprotein.
  
  
 0.899
COSY_0472
Conserved hypothetical protein.
       0.752
COSY_0476
Conserved hypothetical protein; Similar to anthranilate synthase component I (EC: 4.1.3.27) and para-aminobenzoate synthase component I (EC: 2.6.1.85).
       0.746
spoT
Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
   
   0.605
COSY_0469
Putative aromatic compound/drug exporter (ACDE) family in major facilitator superfamily (MFS).
 
     0.492
comL
Competence lipoprotein ComL; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
     
 0.445
Your Current Organism:
Vesicomyosocius okutanii
NCBI taxonomy Id: 412965
Other names: C. Vesicomyosocius okutanii HA, Calyptogena okutanii thioautotrophic gill symbiont HA, Candidatus Vesicomyosocius okutanii HA, Candidatus Vesicomyosocius okutanii str. HA, Candidatus Vesicomyosocius okutanii strain HA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.