STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmag_0022KEGG: pha:PSHAa0339 hypothetical protein. (257 aa)    
Predicted Functional Partners:
Rmag_0021
PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: tbd:Tbd_2152 peptidyl-prolyl cis-trans isomerase.
       0.768
purC
KEGG: tcx:Tcr_0262 phosphoribosylaminoimidazole-succinocarboxamide synthase; TIGRFAM: phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase.
       0.671
Rmag_0020
PFAM: aminotransferase, class I and II; KEGG: hch:HCH_01778 aspartate/tyrosine/aromatic aminotransferase.
       0.601
Rmag_0018
PFAM: homoserine O-succinyltransferase; KEGG: noc:Noc_2703 hypothetical protein.
       0.540
Rmag_0019
KEGG: noc:Noc_2702 hypothetical protein.
       0.540
Your Current Organism:
Ruthia magnifica
NCBI taxonomy Id: 413404
Other names: C. Ruthia magnifica str. Cm (Calyptogena magnifica), Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica), Candidatus Ruthia magnifica strain Cm (Calyptogena magnifica), Ruthia magnifica str. Cm (Calyptogena magnifica)
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