Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rmag_0086KEGG: tbd:Tbd_2284 hypothetical protein. (289 aa)    
Predicted Functional Partners:
Rmag_0087
TIGRFAM: adenylylsulfate reductase, beta subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: tbd:Tbd_2283 adenylylsulfate reductase, beta subunit.
 
     0.936
Rmag_0088
TIGRFAM: adenylylsulfate reductase, alpha subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: tbd:Tbd_2282 adenylylsulfate reductase, alpha subunit.
 
     0.930
Rmag_0089
KEGG: tbd:Tbd_2281 hypothetical protein.
 
     0.893
Rmag_0090
KEGG: tbd:Tbd_2280 putative peptidyl-prolyl cis-trans isomerase.
 
     0.884
Rmag_0269
Hypothetical protein.
  
     0.713
Rmag_1010
KEGG: tbd:Tbd_2490 hypothetical protein.
  
     0.593
Rmag_0115
KEGG: tbd:Tbd_2558 hypothetical protein.
  
     0.547
sat
KEGG: tbd:Tbd_0874 ATP-sulfurylase; TIGRFAM: sulfate adenylyltransferase; PFAM: ATP-sulfurylase; Belongs to the sulfate adenylyltransferase family.
 
     0.541
Rmag_1033
Hypothetical protein.
  
     0.527
Rmag_1041
KEGG: tbd:Tbd_2491 hypothetical protein.
  
     0.526
Your Current Organism:
Ruthia magnifica
NCBI taxonomy Id: 413404
Other names: C. Ruthia magnifica str. Cm (Calyptogena magnifica), Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica), Candidatus Ruthia magnifica strain Cm (Calyptogena magnifica), Ruthia magnifica str. Cm (Calyptogena magnifica)
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