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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmag_0089KEGG: tbd:Tbd_2281 hypothetical protein. (116 aa)    
Predicted Functional Partners:
Rmag_0090
KEGG: tbd:Tbd_2280 putative peptidyl-prolyl cis-trans isomerase.
 
     0.950
Rmag_0087
TIGRFAM: adenylylsulfate reductase, beta subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: tbd:Tbd_2283 adenylylsulfate reductase, beta subunit.
 
     0.907
Rmag_0088
TIGRFAM: adenylylsulfate reductase, alpha subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: tbd:Tbd_2282 adenylylsulfate reductase, alpha subunit.
 
     0.900
Rmag_0086
KEGG: tbd:Tbd_2284 hypothetical protein.
 
     0.892
Rmag_0091
KEGG: tbd:Tbd_1503 hypothetical protein.
       0.773
Rmag_0269
Hypothetical protein.
  
     0.687
Rmag_1010
KEGG: tbd:Tbd_2490 hypothetical protein.
  
     0.594
Rmag_0115
KEGG: tbd:Tbd_2558 hypothetical protein.
  
     0.517
Rmag_1033
Hypothetical protein.
  
     0.497
Rmag_1041
KEGG: tbd:Tbd_2491 hypothetical protein.
  
     0.497
Your Current Organism:
Ruthia magnifica
NCBI taxonomy Id: 413404
Other names: C. Ruthia magnifica str. Cm (Calyptogena magnifica), Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica), Candidatus Ruthia magnifica strain Cm (Calyptogena magnifica), Ruthia magnifica str. Cm (Calyptogena magnifica)
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