STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmag_0213KEGG: tcx:Tcr_0450 hypothetical protein. (206 aa)    
Predicted Functional Partners:
Rmag_0824
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tcx:Tcr_1381 sulfide-quinone reductase.
 
    0.759
Rmag_0718
KEGG: tcx:Tcr_0163 hypothetical protein.
  
     0.706
Rmag_0588
KEGG: dar:Daro_3003 hypothetical protein.
  
     0.661
Rmag_1041
KEGG: tbd:Tbd_2491 hypothetical protein.
  
     0.652
Rmag_0331
Putative prophage repressor; PFAM: peptidase S24, S26A and S26B; KEGG: tbd:Tbd_1516 hypothetical protein.
  
     0.629
Rmag_0861
Hypothetical protein; KEGG: mag:amb3376 Hdr-like menaquinol oxidoreductase cytochrome c subunit.
  
     0.599
Rmag_0615
KEGG: tbd:Tbd_2487 hypothetical protein.
  
     0.587
Rmag_0388
16S rRNA m(2)G 1207 methyltransferase; PFAM: methyltransferase small; KEGG: tcx:Tcr_0213 methyltransferase small.
  
     0.579
Rmag_0321
Hypothetical protein.
  
     0.570
Rmag_0859
PFAM: Polysulphide reductase, NrfD; KEGG: tbd:Tbd_2474 molybdopterin oxidoreductase, membrane subunit.
  
     0.555
Your Current Organism:
Ruthia magnifica
NCBI taxonomy Id: 413404
Other names: C. Ruthia magnifica str. Cm (Calyptogena magnifica), Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica), Candidatus Ruthia magnifica strain Cm (Calyptogena magnifica), Ruthia magnifica str. Cm (Calyptogena magnifica)
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