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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmag_0251PFAM: glycosyl hydrolase, BNR repeat-containing protein; KEGG: rso:RS05070 putative hemagglutinin/hemolysin-related protein. (2819 aa)    
Predicted Functional Partners:
Rmag_0256
PFAM: secretion protein HlyD family protein; KEGG: par:Psyc_1598 HlyD family secretion protein.
  
     0.568
Rmag_0255
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: par:Psyc_1599 ABC drug efflux transporter, fused ATPase and inner mebrane subunits.
  
     0.517
Rmag_0762
PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase, catalytic; KEGG: cps:CPS_1998 putative membrane-bound lytic murein transglycosylase.
  
  
 0.403
Your Current Organism:
Ruthia magnifica
NCBI taxonomy Id: 413404
Other names: C. Ruthia magnifica str. Cm (Calyptogena magnifica), Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica), Candidatus Ruthia magnifica strain Cm (Calyptogena magnifica), Ruthia magnifica str. Cm (Calyptogena magnifica)
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