node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Rmag_0080 | Rmag_0803 | Rmag_0080 | Rmag_0803 | PFAM: UvrD/REP helicase; KEGG: cbu:CBU_1230 UvrD/REP helicase family protein; Belongs to the helicase family. UvrD subfamily. | KEGG: noc:Noc_0846 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein. | 0.485 |
Rmag_0080 | ligA | Rmag_0080 | Rmag_0280 | PFAM: UvrD/REP helicase; KEGG: cbu:CBU_1230 UvrD/REP helicase family protein; Belongs to the helicase family. UvrD subfamily. | DNA ligase (NAD(+)); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.479 |
Rmag_0080 | polA | Rmag_0080 | Rmag_0078 | PFAM: UvrD/REP helicase; KEGG: cbu:CBU_1230 UvrD/REP helicase family protein; Belongs to the helicase family. UvrD subfamily. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.872 |
Rmag_0209 | Rmag_0320 | Rmag_0209 | Rmag_0320 | 16S rRNA m(5)C-967 methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | PFAM: UvrD/REP helicase; KEGG: pha:PSHAa0122 DNA-dependent ATPase I. | 0.657 |
Rmag_0209 | ligA | Rmag_0209 | Rmag_0280 | 16S rRNA m(5)C-967 methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | DNA ligase (NAD(+)); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.955 |
Rmag_0209 | polA | Rmag_0209 | Rmag_0078 | 16S rRNA m(5)C-967 methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.553 |
Rmag_0209 | topA | Rmag_0209 | Rmag_1034 | 16S rRNA m(5)C-967 methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.622 |
Rmag_0279 | dapA | Rmag_0279 | Rmag_0278 | KEGG: dar:Daro_0847 NlpBDapX lipoprotein. | Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). | 0.812 |
Rmag_0279 | ligA | Rmag_0279 | Rmag_0280 | KEGG: dar:Daro_0847 NlpBDapX lipoprotein. | DNA ligase (NAD(+)); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.586 |
Rmag_0320 | Rmag_0209 | Rmag_0320 | Rmag_0209 | PFAM: UvrD/REP helicase; KEGG: pha:PSHAa0122 DNA-dependent ATPase I. | 16S rRNA m(5)C-967 methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.657 |
Rmag_0320 | Rmag_0803 | Rmag_0320 | Rmag_0803 | PFAM: UvrD/REP helicase; KEGG: pha:PSHAa0122 DNA-dependent ATPase I. | KEGG: noc:Noc_0846 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein. | 0.531 |
Rmag_0320 | ligA | Rmag_0320 | Rmag_0280 | PFAM: UvrD/REP helicase; KEGG: pha:PSHAa0122 DNA-dependent ATPase I. | DNA ligase (NAD(+)); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.734 |
Rmag_0320 | polA | Rmag_0320 | Rmag_0078 | PFAM: UvrD/REP helicase; KEGG: pha:PSHAa0122 DNA-dependent ATPase I. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.694 |
Rmag_0320 | topA | Rmag_0320 | Rmag_1034 | PFAM: UvrD/REP helicase; KEGG: pha:PSHAa0122 DNA-dependent ATPase I. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.710 |
Rmag_0320 | uvrA | Rmag_0320 | Rmag_0263 | PFAM: UvrD/REP helicase; KEGG: pha:PSHAa0122 DNA-dependent ATPase I. | Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.650 |
Rmag_0803 | Rmag_0080 | Rmag_0803 | Rmag_0080 | KEGG: noc:Noc_0846 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein. | PFAM: UvrD/REP helicase; KEGG: cbu:CBU_1230 UvrD/REP helicase family protein; Belongs to the helicase family. UvrD subfamily. | 0.485 |
Rmag_0803 | Rmag_0320 | Rmag_0803 | Rmag_0320 | KEGG: noc:Noc_0846 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein. | PFAM: UvrD/REP helicase; KEGG: pha:PSHAa0122 DNA-dependent ATPase I. | 0.531 |
Rmag_0803 | ligA | Rmag_0803 | Rmag_0280 | KEGG: noc:Noc_0846 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein. | DNA ligase (NAD(+)); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.520 |
Rmag_0803 | polA | Rmag_0803 | Rmag_0078 | KEGG: noc:Noc_0846 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.583 |
Rmag_0803 | topA | Rmag_0803 | Rmag_1034 | KEGG: noc:Noc_0846 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.526 |