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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmag_0454TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: ilo:IL0395 S30EA ribosomal protein. (98 aa)    
Predicted Functional Partners:
rpsI
PFAM: ribosomal protein S9; KEGG: cps:CPS_4442 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
 
 
 0.971
rpsU
PFAM: ribosomal protein S21; KEGG: tcx:Tcr_1809 ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.970
rplI
LSU ribosomal protein L9P; Binds to the 23S rRNA.
  
   0.967
rpmA
PFAM: ribosomal protein L27; KEGG: vch:VC0436 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
    
 
 0.967
rpmG
PFAM: ribosomal protein L33; KEGG: hch:HCH_01018 ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
   
   0.967
rpmB
PFAM: ribosomal protein L28; KEGG: sde:Sde_3679 50S ribosomal subunit protein L28; Belongs to the bacterial ribosomal protein bL28 family.
   
   0.967
rpmH
PFAM: ribosomal protein L34; KEGG: vvy:VV0005 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
    
 
 0.967
rpmC
PFAM: ribosomal protein L29; KEGG: tcx:Tcr_0303 ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
    
 
 0.966
rpsE
SSU ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
    
 
 0.966
rpsP
PFAM: ribosomal protein S16; KEGG: lpp:lpp0466 hypothetical protein; Belongs to the bacterial ribosomal protein bS16 family.
    
 
 0.966
Your Current Organism:
Ruthia magnifica
NCBI taxonomy Id: 413404
Other names: C. Ruthia magnifica str. Cm (Calyptogena magnifica), Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica), Candidatus Ruthia magnifica strain Cm (Calyptogena magnifica), Ruthia magnifica str. Cm (Calyptogena magnifica)
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