STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmag_0545TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: pha:PSHAa2832 multidrug efflux system (AcrA/AcrE); Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (391 aa)    
Predicted Functional Partners:
Rmag_0544
PFAM: acriflavin resistance protein; KEGG: gme:Gmet_3127 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.982
Rmag_0253
PFAM: outer membrane efflux protein; KEGG: cvi:CV1734 probable outer membrane protein.
  
 
 0.800
lolD
ABC transporter related protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
  
 
 0.776
Rmag_0369
PFAM: acriflavin resistance protein; KEGG: lil:LA2439 acriflavine resistance protein homolog; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.765
Rmag_0582
KEGG: bfr:BF4142 outer membrane efflux protein.
  
 
 0.686
Rmag_0824
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tcx:Tcr_1381 sulfide-quinone reductase.
  
     0.536
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
     
 0.509
Rmag_0549
Bis(5'nucleosyl)-tetraphosphatase, ApaH; KEGG: tbd:Tbd_0168 bis(5'-nucleosyl)-tetraphosphatase (symmetrical); TIGRFAM: bis(5'-nucleosyl)-tetraphosphatase (symmetrical); PFAM: metallophosphoesterase.
  
    0.498
pdxA
4-hydroxythreonine-4-phosphate dehydrogenase; Catalyzes the NAD(P)-dependent oxidation of 4-(phosphooxy)-L- threonine (HTP) into 2-amino-3-oxo-4-(phosphooxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP).
       0.496
Rmag_0548
PFAM: ApaG domain protein; KEGG: neu:NE1573 ApaG protein.
       0.496
Your Current Organism:
Ruthia magnifica
NCBI taxonomy Id: 413404
Other names: C. Ruthia magnifica str. Cm (Calyptogena magnifica), Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica), Candidatus Ruthia magnifica strain Cm (Calyptogena magnifica), Ruthia magnifica str. Cm (Calyptogena magnifica)
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