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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmag_0588KEGG: dar:Daro_3003 hypothetical protein. (92 aa)    
Predicted Functional Partners:
rsgA
Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
       0.718
Rmag_0213
KEGG: tcx:Tcr_0450 hypothetical protein.
  
     0.661
Rmag_0587
PFAM: peptidase M48, Ste24p; KEGG: neu:NE0076 peptidase family M48.
       0.658
Rmag_0824
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tcx:Tcr_1381 sulfide-quinone reductase.
  
     0.509
Rmag_1041
KEGG: tbd:Tbd_2491 hypothetical protein.
  
     0.504
Rmag_0861
Hypothetical protein; KEGG: mag:amb3376 Hdr-like menaquinol oxidoreductase cytochrome c subunit.
  
     0.503
Rmag_0269
Hypothetical protein.
  
     0.473
Rmag_0615
KEGG: tbd:Tbd_2487 hypothetical protein.
  
     0.454
Rmag_0115
KEGG: tbd:Tbd_2558 hypothetical protein.
  
     0.442
Rmag_0586
Hypothetical protein.
       0.424
Your Current Organism:
Ruthia magnifica
NCBI taxonomy Id: 413404
Other names: C. Ruthia magnifica str. Cm (Calyptogena magnifica), Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica), Candidatus Ruthia magnifica strain Cm (Calyptogena magnifica), Ruthia magnifica str. Cm (Calyptogena magnifica)
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