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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmag_0615KEGG: tbd:Tbd_2487 hypothetical protein. (220 aa)    
Predicted Functional Partners:
Rmag_1041
KEGG: tbd:Tbd_2491 hypothetical protein.
 
     0.790
Rmag_1033
Hypothetical protein.
 
     0.787
Rmag_1010
KEGG: tbd:Tbd_2490 hypothetical protein.
 
     0.782
Rmag_0115
KEGG: tbd:Tbd_2558 hypothetical protein.
  
     0.774
Rmag_0321
Hypothetical protein.
  
     0.774
Rmag_0331
Putative prophage repressor; PFAM: peptidase S24, S26A and S26B; KEGG: tbd:Tbd_1516 hypothetical protein.
  
     0.770
Rmag_0269
Hypothetical protein.
  
     0.769
Rmag_0722
KEGG: noc:Noc_2908 hypothetical protein.
  
     0.769
Rmag_0859
PFAM: Polysulphide reductase, NrfD; KEGG: tbd:Tbd_2474 molybdopterin oxidoreductase, membrane subunit.
  
     0.763
Rmag_0861
Hypothetical protein; KEGG: mag:amb3376 Hdr-like menaquinol oxidoreductase cytochrome c subunit.
  
     0.762
Your Current Organism:
Ruthia magnifica
NCBI taxonomy Id: 413404
Other names: C. Ruthia magnifica str. Cm (Calyptogena magnifica), Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica), Candidatus Ruthia magnifica strain Cm (Calyptogena magnifica), Ruthia magnifica str. Cm (Calyptogena magnifica)
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