Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rmag_0678PFAM: Rieske [2Fe-2S] domain protein; KEGG: tbd:Tbd_0271 putative dioxygenase ferredoxin subunit. (105 aa)    
Predicted Functional Partners:
Rmag_0688
TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: mca:MCA0592 nitrite reductase [NAD(P)H], large subunit.
 
  
 0.957
Rmag_0677
PFAM: glycosyl transferase, family 3; KEGG: tbd:Tbd_0270 anthranilate phosphoribosyltransferase-like protein.
 
     0.865
cysG
uroporphyrinogen-III C-methyltransferase / precorrin-2 dehydrogenase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme.
  
  
 0.840
Rmag_0679
PFAM: Lytic transglycosylase, catalytic; KEGG: cps:CPS_4077 putative lipoprotein.
       0.773
Rmag_0680
PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein.
       0.773
Rmag_0685
PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; KEGG: mca:MCA0590 nitrate reductase.
 
  
 0.556
Rmag_1018
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: rba:RB5654 glutamate synthase [NADPH] large chain.
   
  
 0.516
Rmag_0284
PFAM: ANTAR domain protein; KEGG: mca:MCA0588 response regulator NasT.
 
    0.492
Rmag_0864
PFAM: Nitrate reductase, gamma subunit; KEGG: tbd:Tbd_2479 putative DsrM protein.
  
  
 0.464
Rmag_0764
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; Ferric reductase, NAD binding; KEGG: tbd:Tbd_2563 NAD(P)H-flavin reductase.
 
   
 0.403
Your Current Organism:
Ruthia magnifica
NCBI taxonomy Id: 413404
Other names: C. Ruthia magnifica str. Cm (Calyptogena magnifica), Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica), Candidatus Ruthia magnifica strain Cm (Calyptogena magnifica), Ruthia magnifica str. Cm (Calyptogena magnifica)
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