Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rmag_0701Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; PFAM: ribulose bisphosphate carboxylase, large chain; KEGG: tcx:Tcr_0424 ribulose-bisphosphate carboxylase; Belongs to the RuBisCO large chain family. (460 aa)    
Predicted Functional Partners:
Rmag_0004
PFAM: phosphoribulokinase/uridine kinase; KEGG: tbd:Tbd_2447 phosphoribulokinase.
 
 
 0.966
Rmag_0117
KEGG: tcx:Tcr_0265 phosphoglycolate phosphatase; TIGRFAM: phosphoglycolate phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase.
    
  0.904
pgk
PFAM: phosphoglycerate kinase; KEGG: ilo:IL2212 3-phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
 0.903
Rmag_0699
PFAM: von Willebrand factor, type A; KEGG: tcx:Tcr_0422 von Willebrand factor, type A.
 
   
 0.857
Rmag_0700
CbbQ/NirQ/NorQ C-terminal domain protein; PFAM: ATPase associated with various cellular activities, AAA_5; CbbQ/NirQ/NorQ C-terminal domain protein; SMART: AAA ATPase; KEGG: tcx:Tcr_0423 ATPase associated with various cellular activities, AAA_5.
 
   
 0.667
Rmag_0421
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: tcx:Tcr_1242 HAD-superfamily hydrolase subfamily IA, variant 3.
 
   
 0.644
Your Current Organism:
Ruthia magnifica
NCBI taxonomy Id: 413404
Other names: C. Ruthia magnifica str. Cm (Calyptogena magnifica), Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica), Candidatus Ruthia magnifica strain Cm (Calyptogena magnifica), Ruthia magnifica str. Cm (Calyptogena magnifica)
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