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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmag_0718KEGG: tcx:Tcr_0163 hypothetical protein. (209 aa)    
Predicted Functional Partners:
Rmag_0719
Hypothetical protein.
 
     0.812
Rmag_0717
TIGRFAM: conserved hypothetical protein; PFAM: arsenate reductase and related; KEGG: pha:PSHAa1332 enzyme with thioredoxin-like domain; Belongs to the ArsC family.
       0.773
Rmag_0418
KEGG: tcx:Tcr_0164 hypothetical protein.
 
     0.768
Rmag_0076
KEGG: tcx:Tcr_1961 hypothetical protein.
  
     0.721
Rmag_0213
KEGG: tcx:Tcr_0450 hypothetical protein.
  
     0.706
Rmag_0722
KEGG: noc:Noc_2908 hypothetical protein.
  
     0.675
Rmag_0457
PFAM: Positive regulator of sigma(E), RseC/MucC; KEGG: eca:ECA3281 sigma-E factor regulatory protein.
  
     0.661
Rmag_0388
16S rRNA m(2)G 1207 methyltransferase; PFAM: methyltransferase small; KEGG: tcx:Tcr_0213 methyltransferase small.
  
     0.621
Rmag_0144
KEGG: tcx:Tcr_0902 hypothetical protein.
  
     0.617
Rmag_0115
KEGG: tbd:Tbd_2558 hypothetical protein.
  
     0.555
Your Current Organism:
Ruthia magnifica
NCBI taxonomy Id: 413404
Other names: C. Ruthia magnifica str. Cm (Calyptogena magnifica), Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica), Candidatus Ruthia magnifica strain Cm (Calyptogena magnifica), Ruthia magnifica str. Cm (Calyptogena magnifica)
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