STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmag_0752PFAM: RDD domain containing protein; KEGG: nmu:Nmul_A1054 RDD. (138 aa)    
Predicted Functional Partners:
xseA
Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.
  
    0.786
Rmag_0751
PFAM: peptidase M23B; KEGG: psp:PSPPH_1330 peptidase, M23/M37 family.
       0.773
Rmag_0009
KEGG: lpf:lpl2631 ubiquinol-cytochrome c reductase cytochrome c1 subunit.
  
     0.647
hflD
PFAM: protein of unknown function DUF489; KEGG: hch:HCH_02332 uncharacterized protein involved in purine metabolism.
 
     0.593
Rmag_0011
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
     0.584
Rmag_0203
PFAM: cytochrome c, class I; KEGG: ppr:PBPRA3501 putative cytochrome c4.
  
     0.580
Rmag_0385
KEGG: cps:CPS_2123 hypothetical protein.
  
     0.572
Rmag_0753
Hypothetical protein.
       0.558
Rmag_0754
Cell division protein FtsB; PFAM: Septum formation initiator.
       0.529
Rmag_0760
KEGG: pfo:Pfl_4670 cell division protein FtsQ.
 
     0.520
Your Current Organism:
Ruthia magnifica
NCBI taxonomy Id: 413404
Other names: C. Ruthia magnifica str. Cm (Calyptogena magnifica), Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica), Candidatus Ruthia magnifica strain Cm (Calyptogena magnifica), Ruthia magnifica str. Cm (Calyptogena magnifica)
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