Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Rmag_0767PFAM: protein of unknown function UPF0005; KEGG: tbd:Tbd_0489 hypothetical protein; Belongs to the BI1 family. (219 aa)    
Predicted Functional Partners:
rppH
NUDIX hydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily.
 
     0.761
murD
UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.
       0.558
Rmag_0399
PFAM: peptidase M48, Ste24p; KEGG: vvy:VVA0973 Zn-dependent protease with chaperone function.
  
  
 0.539
Rmag_0235
Membrane protein-like protein; KEGG: lpp:lpp1719 hypothetical protein.
  
     0.509
Rmag_0769
PFAM: homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase, NAD-binding; KEGG: mca:MCA0597 homoserine dehydrogenase.
       0.508
Rmag_0770
L-threonine synthase; Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine.
       0.498
Rmag_0773
PFAM: Cl- channel, voltage-gated family protein; KEGG: rpa:RPA3953 putative chloride channel protein.
 
     0.479
Rmag_0534
Protease FtsH subunit HflK; HflC and HflK could encode or regulate a protease.
      
 0.466
Rmag_0771
KEGG: xoo:XOO4599 hypothetical protein.
       0.431
Rmag_0976
PFAM: protein of unknown function UPF0125; KEGG: dar:Daro_2340 hypothetical protein; Belongs to the UPF0125 (RnfH) family.
  
     0.404
Your Current Organism:
Ruthia magnifica
NCBI taxonomy Id: 413404
Other names: C. Ruthia magnifica str. Cm (Calyptogena magnifica), Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica), Candidatus Ruthia magnifica strain Cm (Calyptogena magnifica), Ruthia magnifica str. Cm (Calyptogena magnifica)
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.