STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmag_0804Hypothetical protein. (106 aa)    
Predicted Functional Partners:
Rmag_0805
Diheme cytochrome SoxA (sulfur oxidation); KEGG: tcx:Tcr_0601 sulfur oxidation protein SoxA.
       0.773
Rmag_0806
Sulfur compound chelating protein SoxZ; KEGG: bja:bll1012 sulfur oxidation protein.
       0.689
Rmag_0807
KEGG: tcx:Tcr_0603 sulfur oxidation protein SoxY-like.
       0.600
Rmag_0808
Monoheme cytochrome SoxX (sulfur oxidation); KEGG: tbd:Tbd_0567 sulfur oxidation protein SoxX.
       0.596
Rmag_0803
KEGG: noc:Noc_0846 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein.
       0.468
Your Current Organism:
Ruthia magnifica
NCBI taxonomy Id: 413404
Other names: C. Ruthia magnifica str. Cm (Calyptogena magnifica), Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica), Candidatus Ruthia magnifica strain Cm (Calyptogena magnifica), Ruthia magnifica str. Cm (Calyptogena magnifica)
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