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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rmag_0860TIGRFAM: Twin-arginine translocation pathway signal; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: tbd:Tbd_2475 iron-sulfur cluster protein. (243 aa)    
Predicted Functional Partners:
Rmag_0859
PFAM: Polysulphide reductase, NrfD; KEGG: tbd:Tbd_2474 molybdopterin oxidoreductase, membrane subunit.
 
 
 0.998
Rmag_0685
PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; KEGG: mca:MCA0590 nitrate reductase.
  
 
 0.991
Rmag_0808
Monoheme cytochrome SoxX (sulfur oxidation); KEGG: tbd:Tbd_0567 sulfur oxidation protein SoxX.
  
 0.958
Rmag_0806
Sulfur compound chelating protein SoxZ; KEGG: bja:bll1012 sulfur oxidation protein.
  
  
  0.913
Rmag_0805
Diheme cytochrome SoxA (sulfur oxidation); KEGG: tcx:Tcr_0601 sulfur oxidation protein SoxA.
    
  0.908
Rmag_0861
Hypothetical protein; KEGG: mag:amb3376 Hdr-like menaquinol oxidoreductase cytochrome c subunit.
 
  
 0.901
Rmag_0156
Sulfate thiol esterase SoxB; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: tcx:Tcr_1549 sulfate thiol esterase; Belongs to the 5'-nucleotidase family.
     
  0.900
Rmag_0807
KEGG: tcx:Tcr_0603 sulfur oxidation protein SoxY-like.
     
  0.900
Rmag_0862
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mag:amb3375 NADPH-dependent glutamate synthase beta chain and related oxidoreductase.
 
   
 0.890
Rmag_0864
PFAM: Nitrate reductase, gamma subunit; KEGG: tbd:Tbd_2479 putative DsrM protein.
 
  
 0.829
Your Current Organism:
Ruthia magnifica
NCBI taxonomy Id: 413404
Other names: C. Ruthia magnifica str. Cm (Calyptogena magnifica), Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica), Candidatus Ruthia magnifica strain Cm (Calyptogena magnifica), Ruthia magnifica str. Cm (Calyptogena magnifica)
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