Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rmag_0868PFAM: DsrE family protein; KEGG: mag:amb3369 intracellular sulfur oxidation protein DsrE. (133 aa)    
Predicted Functional Partners:
Rmag_0866
PFAM: DsrH family protein; KEGG: tbd:Tbd_2481 DsrH protein.
 
 0.999
Rmag_0867
PFAM: DsrE family protein; KEGG: mag:amb3370 uncharacterized protein involved in the oxidation of intracellular sulfur; Belongs to the DsrF/TusC family.
 
 0.999
Rmag_0225
PFAM: SirA family protein; KEGG: mag:amb0858 predicted redox protein; Belongs to the sulfur carrier protein TusA family.
  
 
 0.972
Rmag_0622
DsrC family protein; Part of a sulfur-relay system.
 
 
 0.954
Rmag_0497
PFAM: SirA family protein; KEGG: noc:Noc_2653 SirA-like protein; Belongs to the sulfur carrier protein TusA family.
  
 
 0.952
Rmag_0865
DsrC family protein; Part of a sulfur-relay system.
 
  
 0.950
Rmag_0869
KEGG: tbd:Tbd_2484 sulfite reductase, dissimilatory-type beta subunit; TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region.
 
   
 0.895
Rmag_0861
Hypothetical protein; KEGG: mag:amb3376 Hdr-like menaquinol oxidoreductase cytochrome c subunit.
 
     0.856
Rmag_0864
PFAM: Nitrate reductase, gamma subunit; KEGG: tbd:Tbd_2479 putative DsrM protein.
 
     0.829
Rmag_0863
PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: tbd:Tbd_2478 reductase, iron-sulfur binding subunit, putative.
 
   
 0.813
Your Current Organism:
Ruthia magnifica
NCBI taxonomy Id: 413404
Other names: C. Ruthia magnifica str. Cm (Calyptogena magnifica), Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica), Candidatus Ruthia magnifica strain Cm (Calyptogena magnifica), Ruthia magnifica str. Cm (Calyptogena magnifica)
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