Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Rmag_0975PFAM: CBS domain containing protein; transporter-associated region; KEGG: hch:HCH_05351 putative Mg2+ and Co2+ transporter CorC. (282 aa)    
Predicted Functional Partners:
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
  
  
 0.837
Rmag_0973
Microcin-processing peptidase 1, Unknown type peptidase, MEROPS family U62; PFAM: peptidase U62, modulator of DNA gyrase; KEGG: mca:MCA0383 PmbA protein.
       0.775
Rmag_0972
TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; KEGG: tcx:Tcr_1557 ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family.
       0.773
Rmag_0974
KEGG: tcx:Tcr_0203 hypothetical protein.
       0.773
Rmag_0976
PFAM: protein of unknown function UPF0125; KEGG: dar:Daro_2340 hypothetical protein; Belongs to the UPF0125 (RnfH) family.
       0.651
hisA
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; KEGG: sde:Sde_0489 response regulator receiver domain protein (CheY-like); TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis.
       0.651
Rmag_0455
Magnesium transporter; Acts as a magnesium transporter.
      
 0.447
Your Current Organism:
Ruthia magnifica
NCBI taxonomy Id: 413404
Other names: C. Ruthia magnifica str. Cm (Calyptogena magnifica), Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica), Candidatus Ruthia magnifica strain Cm (Calyptogena magnifica), Ruthia magnifica str. Cm (Calyptogena magnifica)
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