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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmHPFAM: ribosomal protein L34; KEGG: vvy:VV0005 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. (46 aa)    
Predicted Functional Partners:
rpmB
PFAM: ribosomal protein L28; KEGG: sde:Sde_3679 50S ribosomal subunit protein L28; Belongs to the bacterial ribosomal protein bL28 family.
   
 
 0.995
rpsU
PFAM: ribosomal protein S21; KEGG: tcx:Tcr_1809 ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.994
rpmF
TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: neu:NE1644 probable 50S ribosomal subunit protein L32; Belongs to the bacterial ribosomal protein bL32 family.
   
 
 0.994
rpsT
SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA.
  
 
 0.994
rpsP
PFAM: ribosomal protein S16; KEGG: lpp:lpp0466 hypothetical protein; Belongs to the bacterial ribosomal protein bS16 family.
   
 
 0.994
rpsN
SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.993
rpmJ
PFAM: ribosomal protein L36; KEGG: vpa:VP0278 ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
  
 
 0.992
rplU
LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.992
rpmG
PFAM: ribosomal protein L33; KEGG: hch:HCH_01018 ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
   
 
 0.992
rpsL
SSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy.
   
 
 0.991
Your Current Organism:
Ruthia magnifica
NCBI taxonomy Id: 413404
Other names: C. Ruthia magnifica str. Cm (Calyptogena magnifica), Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica), Candidatus Ruthia magnifica strain Cm (Calyptogena magnifica), Ruthia magnifica str. Cm (Calyptogena magnifica)
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